Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015792707.1_cds_XP_016513789.1_2553
CDS Infomation

[gene=LOC107830669] [db_xref=GeneID:107830669] [protein=clathrin interactor EPSIN 1-like isoform X2] [protein_id=XP_016513789.1] [location=join(15977..16017,16132..16183,17156..17235,17328..17406,17608..17691,17845..17990,18096..18317,18960..19111,19882..20075,20391..20775,21389..21606)] [gbkey=CDS]
Sequence

ATGGATTTCATGAAGGTCTTCGATCAAACGGTCCGCGAAATAAAGAGGGAGGTGAATTTG
AAAGTGTTAAAGATCCCTGAAATAGAGCAAAAGGTATTGGATGCTACGGATGATGAGCCT
TGGGGCCCTCATGGTACTGCTCTGGCTGAGATAGCACAGGCTACAAAAAAATTCTCCGAG
TGTCAGATGGTCATGAATGTGCTCTGGACAAGATTAACTGAAACCGGAAAGAACTGGCGT
TTTGTTTATAAGTCGTTGGCTGTTATAGAGTACTTGGTGGCACACGGATCTGAACGCGCA
GTTGATGACATCATAGAACATACATATCAGATCTCTTCTCTCACGAGTTTCGAGTATGTT
GAGCCAAGTGGGAAGGATCTGGGCATTAATGTGAGGAAAAAGGCGGAAAATATTGTGGCA
CTATTAAATAACAAAGAGAAGATACAAGAGGTTAGGAATAAAGCTGCTGCAAACCGTGAC
AAGTACGTTGGAGTATCATCTTCTGGAGTGTCATATAAGTCAAGCTCTGCCTCTTTCAGT
AGCAGCGGCGGCAGCTTTCGGAGTAATGAGCGATATGGAGGTTTTGGAAATAAAAGCGAT
GGCGATTCATTTAAGGATAGTTACAGTGAAAAGGATCGATATGATGAAGAAAAGATTGAT
CAAAGTACTTATAAGTCAAAGAAGGGATCTTCTCGTTATGGCAGCAAAGTTCAGGATACT
GTTTCCGCTAGTGGATCAAAGATGATGACGAAGATAGGTGAGCCTAAAAAGTCTTCTTCA
CAGAGATCAACTGTACCATCAAGCAATTACGAGGAAGATTTTGACGATTTTGATCCTCGG
GGGACTTCGAGTGCTAAGCCTTCTACAGGAAATTCTAACCAAGTAGATCTATTTGGGCAA
AATTTGATCGGTGACCTCTTGGATGCACCGACACCTGCTCCAGCTGCTACGTCTACTGTG
AACACTGATCCATCAGAGGTTGATTTATTTGCTGATGCCACTTTTGTATCAGCAAAACCA
CAGATTTCGGGTGTAGCTTCCCAAACTCCAAAGGGTGTGGATCTGTTTGCCTCCCAGCCT
GCCCCTTCAGCTGCAGCTTCAACAATAGATTTTTTCGCTGCAGCGGATCCTGTTGTACAA
TCTGATAACAGATCTTCAAAACTAGACCAGATGAACATTAACACTGTTGATCCATTTGCT
TCAGTTCCACTAAATACTTTTGATAACTCTGATCCTTTTGGTGCATTTGTTTCTCAACCT
GTATCAATGCCCGATGAAAATGCTAGCAATGGTGGGAGTCATGATGCTCATGACAAATTA
AGCAAATCGTCTGTTGAAGCTAAAACACCGCCAAAGAAGGATACATTTCAAGTCAGGTCT
GGAATATGGGCTGATTCACTGAGTCGTGGGCTGATTGATCTGAATATAACTGCACCCAAA
AAGGTCAACCTTGCAGATGTTGGCATCGTAGGAGGATTGACTGATGGATCAGATGAGAGA
GAAAAAGGGCCTACTACTTTCTACACTAGCAGAGCAATGGGTCAAGGAATCGGACATGGC
AAATCTGGTTTCCCGTCAGCAGCAACAGCTGGAGATGACATATTTTCAAGTCTTAACACA
CAAAACTATCAGTTTGGCGGCTTTCAGAAGTGA

Peptide Sequence

PEP ID

XP_016513789.1
PEP Infomation

PREDICTED: clathrin interactor EPSIN 1-like isoform X2 [Nicotiana tabacum]
Sequence

MDFMKVFDQTVREIKREVNLKVLKIPEIEQKVLDATDDEPWGPHGTALAEIAQATKKFSE
CQMVMNVLWTRLTETGKNWRFVYKSLAVIEYLVAHGSERAVDDIIEHTYQISSLTSFEYV
EPSGKDLGINVRKKAENIVALLNNKEKIQEVRNKAAANRDKYVGVSSSGVSYKSSSASFS
SSGGSFRSNERYGGFGNKSDGDSFKDSYSEKDRYDEEKIDQSTYKSKKGSSRYGSKVQDT
VSASGSKMMTKIGEPKKSSSQRSTVPSSNYEEDFDDFDPRGTSSAKPSTGNSNQVDLFGQ
NLIGDLLDAPTPAPAATSTVNTDPSEVDLFADATFVSAKPQISGVASQTPKGVDLFASQP
APSAAASTIDFFAAADPVVQSDNRSSKLDQMNINTVDPFASVPLNTFDNSDPFGAFVSQP
VSMPDENASNGGSHDAHDKLSKSSVEAKTPPKKDTFQVRSGIWADSLSRGLIDLNITAPK
KVNLADVGIVGGLTDGSDEREKGPTTFYTSRAMGQGIGHGKSGFPSAATAGDDIFSSLNT
QNYQFGGFQK

Transcript Sequence

Gene sequence data has not been registered.